PHARMACOGENETIC RESEARCH NETWORK AND DATABASE Release Date: December 22, 1998 RFA: GM-99-004 P.T. National Institute of General Medical Sciences National Heart, Lung, and Blood Institute National Human Genome Research Institute National Institute of Environmental Health Sciences National Institute of Mental Health National Institute on Alcohol Abuse and Alcoholism Public Briefing Date: March 19, 1999 Letter of Intent Receipt Date: April 30, 1999 Application Receipt Date: July 27, 1999 PURPOSE The purpose of this request for applications (RFA) is to stimulate formation of a network of Research Groups of investigators and development of a public Pharmacogenetic Database, which will become available to the scientific community for use as a research tool. The study of pharmacogenetics and pharmacogenomics presents opportunities to researchers working at levels ranging from the most molecular to the most clinical, in the fields of pharmacology, physiology, genetics, genomics, medicine, epidemiology, statistics, bioinformatics, and computational biology. It would be desirable to bring investigators with these backgrounds together in a research framework, so that functional variation in proteins and genes that play essential roles in determining drug responses can be studied, interpreted, and related to clinical research situations in a rapid and efficient manner. This initiative is designed to support the establishment of a series of multidisciplinary, collaborative Research Groups composed of investigators interested in studying how genetic variation contributes to interindividual differences in drug responses, and in collecting comprehensive, integrative information about specific proteins and genes. A Database Group will also be established and will become responsible for design and implementation of the Pharmacogenetic Database. The questions formulated and addressed by the Research Groups should be constructed so as to yield information that can be stored and used in a database format. All groups will be expected to work cooperatively so that the Pharmacogenetic Database will become an information resource that is of maximum utility to the entire research community, and can stimulate future hypothesis-driven research. This is one of a pair of initiatives designed to address the acquisition of fundamental knowledge required to predict interindividual differences in drug responses. This RFA supports formation of a coordinated Pharmacogenetic Research Network and Database, and is suitable for research conducted by multiple collaborative arrangements. A companion program announcement (PA) entitled "Mechanisms Underlying Individual Variations in Drug Responses" (PA-99-016, see http://www.nih.gov/grants/guide/pa-files/PA-99-016.html) describes opportunities for the support of investigations of critical candidate proteins and genes that may contribute to pharmacogenetic/pharmacogenomic variation, via traditional individual investigator-initiated research projects. HEALTHY PEOPLE 2000 The Public Health Service (PHS) is committed to achieving the health promotion and disease prevention objectives of "Healthy People 2000," a PHS-led national activity for setting priority areas. This RFA, Pharmacogenetic Research Network and Database, is related to one or more of the priority areas. Potential applicants may obtain a copy of "Healthy People 2000" at http://www.crisny.org/health/us/health7.html. ELIGIBILITY REQUIREMENTS Applications may be submitted by domestic and foreign, for-profit and non-profit organizations, public and private, such as universities, colleges, hospitals, laboratories, units of State and local governments, and eligible agencies of the Federal government. Racial/ethnic minority individuals, women, and persons with disabilities are encouraged to apply as Principal Investigators. MECHANISM OF SUPPORT This RFA will use the National Institutes of Health (NIH) cooperative agreement (U01) award mechanism, an "assistance" mechanism, which is distinguished from a regular research grant in that substantial programmatic involvement by NIH staff with the awardees is anticipated. The cooperative agreement is used when participation by NIH staff is warranted to support and stimulate the recipients' activities by involvement in and otherwise working jointly with the award recipients in a partnership role; NIH staff will not assume direction, prime responsibility, or a dominant role in the activity. Details of the responsibilities, relationships, and governance of studies funded under cooperative agreements are discussed later in this document under the section Terms and Conditions of Award. Each component of the Pharmacogenetic Research Network and Database will be awarded as a separate U01. Institutions may propose formation of a multidisciplinary, collaborative Research Group only, or both a Research Group and a Database Group, the latter component being responsible for development of the Pharmacogenetic Database. If an applicant institution wants to propose both a Research Group and a Database Group, the two components should be developed as separate applications, because NIH wants to retain maximum flexibility in organizing the best overall program, and may choose to award only one or the other, or both. It is possible to submit an application for support of a Database Group only. However, it is important for a potential Database Group to demonstrate that there are good connections in place to at least one potential Research Group, or similar site, so that a smoothly integrated two-way exchange of information will take place during the crucial developmental stages for the database. All applications will be assigned to NIGMS initially, for administrative reasons. After discussion with the other participating Institutes, applications may be reassigned where they are programmatically most appropriate. Because the scope of research proposed in response to this RFA may encompass the interests of several Institutes, applications may receive dual assignments based upon established PHS referral guidelines. The anticipated earliest award date is April 1, 2000. FUNDS AVAILABLE The participating Institutes and Centers (ICs) intend to commit $17 to 22 million in FY 2000 to fund applications in response to this RFA. It is anticipated that there will be approximately eight to twelve Research Groups funded, and likely one (but possibly more) Database Group(s) funded, although the actual funding plan will depend upon the scientific opportunities presented and the results of the peer review process. An applicant may request a project period of up to five years for either a Research Group or a Database Group. Because the nature and scope of the proposed research will vary, it is anticipated that the sizes of the awards will also vary. The financial plans of the participating ICs provide support for this program, although awards pursuant to this RFA are contingent upon the availability of funds and receipt of a sufficient number of applications of outstanding scientific and technical merit. It is anticipated that new and renewal applications in this area may be supported in future years, depending upon the success and the needs of the Pharmacogenetic Research Network and Database. RESEARCH OBJECTIVES Background: Pharmacogenetics and pharmacogenomics are related fields involving the study of interindividual differences in drug responses based upon genetic approaches and genomic information, respectively. Polymorphisms (genetic variants that occur with a frequency of 1% or greater) can be identified in individuals, families, and populations for proteins and genes involved in determining drug responses. Yet much more biological and clinical research is needed beyond accumulating sequences and identifying polymorphisms, in order to correctly interpret the functional consequences of genetic variation. This initiative proposes support for development of a network of multidisciplinary Research Groups to study and interpret functional variation in proteins and genes that determine drug responses, and for creation of a Pharmacogenetic Database in which to store, access, and analyze the information for future applications. Establishment of a Pharmacogenetic Research Network and Database is the most comprehensive yet efficient approach to systematically collecting and interpreting pharmacogenetic/pharmacogenomic information. In order to understand which sequence variants are functional and how they actually contribute to individual differences in drug responses, the genetic variation (genotype) must be related to biochemical changes in proteins, to cell and organ functions, to systemic effects, and to the range of possible clinical expressions (phenotype). For this reason, it is envisioned that several investigators trained in different areas working as a collaborative team will be required to achieve insights into the contribution of genetic variation to determining individual drug responses. Once a mosaic of comprehensive biological information for a particular protein or gene and its corresponding variants has been assembled, it should be catalogued in a manner that is accessible and interpretable to a wide range of scientists, in order to have maximum utility as a research tool. Thus, at the same time that thought is being given to how to collect and express information, a Pharmacogenetic Database will be designed to receive the information. Such a database will link genes and their sequence variants to their encoded proteins, their functional changes, and consequent drug response phenotypes (and sometimes disease phenotypes). Representation of sequences and variation information (including but not limited to single nucleotide polymorphisms, SNPs) is rather straightforward. Data representing protein function could include: substrates, inhibitors, reaction constants (Km, Ki, and conditions under which measured), structural information, regulatory proteins, co-substrates or factors, tissue distribution and levels, etc. Sometimes an array of information such as multiple, different mRNA levels will be the most appropriate, where there is a concerted response. There could be several measurable phenotypes associated with a genotype. Rigorous studies, both basic and clinical, are needed to correlate phenotype with genotype. Phenotype information should be standardized to the extent possible. For example, this could be catalogued as patient responses to probe drugs used in a uniform manner, or by methods that stage disease progression, or by an array of information. In this RFA, NIH does not plan to specify which candidate proteins or genes should be first to be studied in the Pharmacogenetic Research Network and Database; a Research Group will specify where it wants to concentrate its activities. Both variation in drug biotransformation/elimination (effects on the time course of drug action, or pharmacokinetics) and variation in the effects of drugs on cells and tissues (as mediated by target receptors, or pharmacodynamics) are of interest. Initially, the NIH focus will be on examining a variety of pharmacologically important proteins and genes, and this will be accomplished by funding a series of Research Groups that are studying a range of different proteins and genes. The Pharmacogenetic Database will contain genotype and phenotype information, as well as protein function, structure, and pathway information where it can be correlated for relationships being studied. Polygenic traits will be particularly challenging to study, and may require development of the appropriate methodology and techniques (see also PA-98-078, http://www.nih.gov/grants/guide/pa-files/PA-98-078.html). As the database grows, it can be used to uncover unexpected relationships, interactions, or multigenic processes that determine individual variations in drug responses. Scope and Objectives: The aim is to support development of a Pharmacogenetic Research Network and Database, comprised of a series of Research Groups and a Database Group. The Pharmacogenetic Research Network and Database overall should have the capacity to collect genetic sequence information, detect polymorphic variants, identify the functional consequences of genetic variation, and rigorously correlate this information with clinical drug responses. A Database Group will be responsible for designing, establishing, and maintaining the Pharmacogenetic Database. A Steering Committee with appropriate representation will be established and will coordinate the activities and exchange of information. The Pharmacogenetic Research Network and Database should improve access to information resources, ideas, expertise, and technology beyond the scope of any single group, and should impact the entire community of researchers in this field. Research Group Description and Tasks A Research Group is a group of multidisciplinary, collaborating biological scientists (at one or several sites) employing a state-of-the-art, comprehensive approach to examining functional variation in their proteins or genes of interest involved in drug responses. Each should be formed by self-assembly of a group of investigators into a cross-disciplinary team, and each will have a unique blend and breadth of complementary research expertises. A Research Group will conceive, develop, and conduct research focused on proteins or genes or a disease of interest to that group, where genetic variation is suspected to play a role in determining interindividual differences in drug responses. Each Research Group must be interested in studying the consequences of genetic variation in drug responses with a comprehensive strategy. Taken as a whole, the Pharmacogenetic Research Network and Database will encompass experiments to examine fundamental relationships ranging from genetic/genomic examination, through the molecular and biochemical levels, through a functional physiological/pharmacological context, and clinical studies, and each group should address several of these aspects. The objective is to rigorously consider how to relate drug response phenotype to genotype. The comprehensive collection of sequence information (e.g., for mRNA, cDNA, genomic DNA, or ESTs) is at times the starting point for initiating a study of functionally significant sequence variation. For example, a Research Group might obtain reference DNA sequences for the exons, regulatory sequences, and introns (where feasible) for the candidate gene(s) of interest, where that information is not already available. The next stage may be determining DNA sequence variation (polymorphisms) in order to catalogue the most common genetic variants. A resource to search initially for possible variants is the NHGRI Human DNA Polymorphism Discovery Resource, which is a publicly available, diversity-rich, anonymous sample set stored at the NIGMS Human Genetic Mutant Cell Repository at the Coriell Institute for Medical Research (see http://www.nhgri.nih.gov/Grant_info/Funding/discover_polymorphisms.html). Investigators are specifically encouraged to use this resource to add to the current body of SNP information, and to deposit the information in the companion SNPs database (dbSNP). In some cases, there may be selected individuals, families, populations, or patients already phenotyped for a drug response or for disease progression, that can be used to relate a drug response to a genetic variant. Clinical or epidemiological studies for linkage or association can be used to identify genes of interest, and functional studies can be designed to examine proteins that may contribute to drug response variations. Corresponding sequences from appropriate reference animals can also be examined, or mutant, transgenic, or knock-out organism studies can be included, as long as the goal is to identify human genetic drug response targets or variants. The biochemical significance of genetic variation, such as altered transcription, structure, splicing, or stability of mRNA, as well as the altered structure, function, regulation, modification, or degradation of the encoded protein(s) can be examined. Or there may be a functional role for genetic variation in non-coding regions. Additionally, the population significance can be addressed, and statistical associations should be made between genotype and phenotype. Further human studies may be necessary to learn allele frequencies, characterize patterns of inheritance, or establish prevalence of a genotype (or haplotype) in selected populations, in order to make future predictions of drug responses. In many circumstances, there may be modifying factors (e.g., environment, diet, age, gender) in addition to genetic variation, and these should be examined where possible in order to gain the most complete insight. It is expected that members of a Research Group will typically have research experience with their proteins or genes of interest. Members of the group should represent many of the areas of expertise required to address the research problem in a comprehensive manner (e.g., molecular and cellular biology, genetics, genomics, pharmacology, clinical pharmacology, pharmaceutics, epidemiology, clinical medicine, computational biology, bioinformatics, or statistics) through collaborations either on campus or off-site. Applicants are expected to have some facilities already available. Other equipment, staffing, or resources may be needed, such as acquisition of current technologies for SNP detection (particularly as sequencing and variant detection become affordable and widely available), or establishment of a transgenic animal colony to study disease progression and variable responses to drug therapy. New technologies may be needed to detect genotype or measure phenotype. New data analysis or mathematical tools may be required at a Research Group site, and these can be developed in order to aid in interpreting results, such as discerning causality versus association of genetic variation. These situations are only examples; there are many possibilities. Applicants should request the funds necessary to assemble a Research Group with a state-of-the-art, cross-disciplinary, comprehensive approach to detecting and studying pharmacogenetic/pharmacogenomic variation in their selected class of proteins or genes. Research Groups will also be expected to represent their research areas, and a mechanism should be proposed to collect the views from members of the specific research communities studying their proteins or genes of interest. These views will be presented and discussed at the Steering Committee meetings (see below). Database Group Description and Tasks A Database Group is a group of bioinformatics scientists or computational biologists responsible for the design, development, implementation, and maintenance of the Pharmacogenetic Database. The group should be united by the aim of designing and developing a Pharmacogenetic Database that will contain and link the information necessary to make pharmacological and possibly disease- related interpretations based upon genetic variation. The database may be organized as component parts initially. It should reflect relationships between genes and gene products that will be complex. It should integrate sequence, function, structure, and distribution information, and reflect concepts where possible (e.g., temporal or sequential responses). The database must allow for the possibility of multiple functions per gene, and for genes that interact with non-genetic factors such as the environment, leading to complex predictors of a drug response. Ultimately, the Pharmacogenetic Database should be designed to serve as a foundation for future hypothesis-driven experiments, and to uncover previously unsuspected correlations, perhaps with genes not yet known to contribute to individual variations in drug responses. A Database Group must interact with the Research Groups to ensure that data entered into the Pharmacogenetic Database are of high quality, complete, accurate, and standardized. The data must be deposited in a manner that is timely yet validated, with properly annotation. Standardized information should be accessed from existing databases already supported by the scientific community, such as Genbank, dbSNP, protein structure database, chemical databases, etc. There should be good interoperability through robust and reciprocal links with these databases. The Database Group may also propose to develop the computational tools necessary to view and evaluate the data in different ways, and to query the data to learn of new relationships, such as the regulation of blocks of genes, or pleiotropic responses. The goal will be to manage complex, interconnected data, with some unknown patterns and relationships, and to integrate the data while retaining its biological meaning. The Pharmacogenetic Database should be well-organized, efficient, convenient, powerful, and structured yet flexible. While one Pharmacogenetic Database is the ultimate goal, it may need to be designed as components or developed in stages, thus proposals for significant components will be considered. Specific issues to be considered include: proposing the optimal database design, identifying a timetable for database development, determining the most appropriate nomenclature where possible in advance, suggesting how to express conditions for the collection of biological information, describing timing for the submission of information, whether stages should exist in the database (raw vs. finished data, validated vs. unvalidated data), documenting validation of the deposited information, establishing a mechanism for correcting errors in the database, coordinating comments from the scientific users, obtaining peer or editorial data review, and identifying and installing the appropriate database links. All aspects of the Pharmacogenetic Database design should be considered and discussed, and the approaches proposed should be clearly explained and justified. Examples should be given where possible. Resources should be requested commensurate with these goals and others as they are identified. Steering Committee Description and Tasks A Steering Committee will be the main governing body of the Pharmacogenetic Research Network and Database. The Steering Committee will include representation from each of the Research Groups and the Database Group, up to six NIH Scientist/Administrators of the appropriate scientific expertises (e.g., pharmacology, genetics, epidemiology), as well as selected scientists other than the awardees where additional expertise is required (e.g., computational biology), when necessary for committee breadth and balance. NIH representation on the Steering Committee will never make up a majority of the total number. This committee will be assembled very soon after the awards are made. The Steering Committee will discuss the overall progress made within the Pharmacogenetic Research Network and Database at its meetings. The committee will make recommendations regarding how data should be obtained and expressed, and encourage data collection that is as uniform and yet as complete as possible, in order to be maximally valuable to all investigators. The committee will discuss and advise development of the Pharmacogenetic Database, and it will seek to develop common guidelines and procedures for depositing the information. The committee will work to set standards for data format and nomenclature. The Steering Committee will also identify and discuss any issues that arise in connection with the scientific aspects of the Pharmacogenetic Research Network and Database. It can create information-gathering subcommittees to follow up on particular issues or needs at any time. The Steering Committee will also listen to the views of the scientific research communities that the Research Groups represent in their respective fields, and consider how the Pharmacogenetic Research Network and Database can have an impact on the larger community. For example, it is possible that as new candidate genes are discovered, they may be nominated to, and evaluated by, the Steering Committee. If a determination is made that a candidate is of pressing importance for pharmacogenetic/pharmacogenomic study, a recommendation could be made that comprehensive variant detection is necessary. In exchange for gaining the equipment, staffing, resources, and infrastructure, the Research Groups must be willing to consider addressing these future, related scientific needs when the time comes, as discussed through the Steering Committee. One Research Group might consent to assume a particular task, subject to mutual agreement, and funding being provided by NIH for a project. In this manner, the Pharmacogenetic Research Network and Database can serve as a resource for scientists conducting investigations outside of the Research Groups. The Steering Committee will in general participate in the process of developing a cohesive Pharmacogenetic Research Network and Database, and will advise NIH on scientific opportunities, emerging needs, or impediments. There should be continued dialogue and a bidirectional exchange of ideas and information between the biological and the informatics dimensions of the overall Pharmacogenetic Research Network and Database. To facilitate this bidirectional exchange, each Research Group will be asked to identify a key data liaison individual with the appropriate experience to interact with the Database Group. The National Center for Biotechnology Information (NCBI) will advise coordination of the Pharmacogenetic Database with other NIH databases it supports (e.g., Genbank, dbSNP). Applicants should request funds according to a plan to send the Principal Investigator or his/her designate to attend the Steering Committee meetings in Bethesda, MD at least twice per year. Funds should also be requested to permit the data liaison individual to meet with a representative of the Database Group at least twice per year in Bethesda, MD (these meetings may be moved to the Database Group site, if practical). Other Institutes of the NIH will be participating in the Pharmacogenetic Research Network and Database, based upon their interests in the following areas: National Heart, Lung, and Blood Institute (NHLBI) - interested in proteins and genes and their variants involved in the treatment and variable responses in cardiovascular, pulmonary, hematological, and sleep disorders National Human Genome Research Institute (NHGRI) - interested in large scale SNP discovery and scoring, and development of tools for analyzing relationships between genotype and phenotype National Institute of Environmental Health Sciences (NIEHS) - interested in proteins and genes affected by environmental exposure; NIEHS also supports the Environmental Genome Project, http://www.niehs.nih.gov/envgenom/home.htm National Institute of Mental Health (NIMH) - interested in proteins and genes involved in the treatment of mental and cognitive disorders; NIMH also supports the NIMH Human Genetics Initiative, http://zork.wustl.edu/nimh/ NIMH_initiative/NIMH_initiative_link.html National Institute on Alcohol Abuse and Alcoholism (NIAAA) - interested in proteins and genes that mediate the effects of alcohol and drugs to modify alcohol's effects SPECIAL REQUIREMENTS FOR COOPERATIVE AGREEMENTS I. Definitions AWARDEE: The institution to which a cooperative agreement is awarded COOPERATIVE AGREEMENT (U01): An assistance mechanism in which there is anticipated substantial programmatic involvement by NIH staff with the recipient organizations during performance of the planned activities PRINCIPAL INVESTIGATOR: The person who assembles the project (for either a Research Group or Database Group) and is responsible for submitting the application in response to this RFA and for performance of the project PHARMACOGENETIC RESEARCH NETWORK AND DATABASE: A series of Research Groups and a Database Group, each funded by a separate cooperative agreement, working together to study pharmacogenetic/pharmacogenomic variation RESEARCH GROUP: A group of multidisciplinary, collaborating biological scientists (at one or several sites) employing a state-of-the-art, comprehensive approach to examining functional variation in their proteins or genes of interest involved in drug responses DATABASE GROUP: A group of bioinformatics scientists or computational biologists responsible for the design, development, implementation, and maintenance of the Pharmacogenetic Database PHARMACOGENETIC DATABASE: A comprehensive database, with computational tools, for the storage, integration, and use of pharmacogenetic/pharmacogenomic information NIH SCIENTIST/ADMINISTRATORS: Representative NIH extramural staff (up to six) who serve on the Steering Committee, who have substantial coordinating scientific roles on the Steering Committee and can guide its recommendations based upon their knowledge of other, related NIH-supported research and resource activities NIGMS PROGRAM DIRECTOR: NIGMS extramural staff person who provides stewardship for the awards, and evaluates and implements the advice of the Steering Committee for allocating NIH support; the NIGMS Program Director also coordinates administrative management of the Pharmacogenetic Research Network and Database STEERING COMMITTEE: A committee that is the main governing body of the Pharmacogenetic Research Network and Database. Membership will include representation from each of the Research Groups and the Database Group, NIH Scientist/Administrators of the appropriate scientific expertises, as well as selected scientists other than the awardees where additional expertise is required, when necessary for committee breadth and balance. NIH representation on the Steering Committee will never make up a majority of the total. ARBITRATION PANEL: A panel formed as needed to review scientific or programmatic disagreements (within the scope of the award) that may arise between the Pharmacogenetic Research Network and Database and the NIH. It will be composed of three members: a designee of the Steering Committee chosen without NIH staff voting, one NIH designee, and a third designee with expertise in the relevant area who is chosen by the other two; in the case of an individual disagreement, the first member may be chosen by the individual awardee. II. Terms and Conditions of Award The following Terms and Conditions will be incorporated into the award statement and will be provided to the Principal Investigator as well as to the appropriate institutional official, at the time of award. The following special terms of award are in addition to, and not in lieu of, otherwise applicable OMB administrative guidelines, HHS grant administration regulations at 45 CFR Parts 74 and 92 (Part 92 is applicable when State and local Governments are eligible to apply), and other HHS, PHS, and NIH grant administration policies: The administrative and funding instrument used for this program will be the cooperative agreement (U01), an "assistance" mechanism (rather than an "acquisition" mechanism), in which substantial NIH programmatic involvement with the awardees is anticipated during performance of the activities. Under the cooperative agreement, the NIH purpose is to support and stimulate the recipients' activities by involvement in and otherwise working jointly with the award recipients in a partnership role; it is not to assume direction, prime responsibility, or a dominant role in the activities. Consistent with this concept, the dominant role and prime responsibility resides with the awardees for the project as a whole, although specific tasks and activities may be shared among the awardees and the NIH through the Steering Committee. Principal Investigator Rights and Responsibilities The Principal Investigator will coordinate project activities scientifically and administratively at the Institution. The Principal Investigator will have the primary responsibility for defining the details for the projects within the guidelines of this RFA, and for performing the scientific activities. A Principal Investigator will agree to accept close coordination, cooperation, and participation of NIH staff in those aspects of management of the project as described under "NIH Scientist/Administrator Responsibilities". Awardees agree to accept and implement the guidelines of the Steering Committee regarding data release into the Pharmacogenetic Database. Awardees will retain custody of and have primary rights to the data developed under these awards, subject to Government rights of access consistent with current HHS, PHS, and NIH policies. Awardees should comply with their institutional property policies and practices as approved in the award. The Principal Investigator of a Research Group or Database Group will: o Determine and coordinate the experimental approaches and procedures o Set project milestones for the Research Group or Database Group o Accept and implement common guidelines approved by the Steering Committee o Submit data to the Pharmacogenetic Database, according to policies established by the Steering Committee o Solicit representative views of other researchers for the proteins or genes of interest o Attend Steering Committee meetings, and participate in the cooperative nature of the group NIH Scientist/Administrators Responsibilities: The NIH Scientist/Administrators are representative NIH extramural staff (up to six) who will serve on the Steering Committee based upon their areas of scientific expertise (e.g., pharmacology, genetics, epidemiology) and guide development of the Pharmacogenetic Research Network and Database by providing overall advice and coordination. They should facilitate a partnership relationship between NIH and the Research Groups and Database Group, and ensure that the directions taken remain consistent with NIH's missions and goals. They will make recommendations regarding support to help maintain scientific balance between directly accomplishing goals and addressing emerging research opportunities. The role of NIH staff will be to facilitate and not to direct activities. It is anticipated that decisions will be reached by consensus with the Principal Investigators through the Steering Committee. The NIH Scientist/Administrators will: o Share his/her relevant expertise and overall knowledge o Help to coordinate activities among the awardees, commensurate with their expertises o Be information resources about ongoing NIH-supported research and resource collections o Attend Steering Committee meetings, and participate in the cooperative nature of the group o Promote the Pharmacogenetic Database to the scientific community at large o Assist in implementing recommendations for allocating NIH support among the awardees Collaborative Responsibilities A Steering Committee will serve as the governing board of the Pharmacogenetic Research Network. Membership will include representation from each of the Research Groups and the Database Group, up to six NIH Scientist/Administrators of the appropriate scientific expertises (e.g., pharmacology, genetics, epidemiology), as well as selected scientists other than the awardees where additional expertise is required, when necessary for committee breadth and balance (e.g., computational biology). The rest of the Steering Committee will appoint these members by majority vote. NIH representation on the Steering Committee will not make up a majority of the total number. Each member will have one vote. The NIGMS Program Director is not a member of the Steering Committee, but will facilitate creation of the group and will attend all meetings. Awardee members of the Steering Committee will be required to accept and implement common guidelines and procedures approved by the Steering Committee. By approximately one month after award of the cooperative agreements, the NIH Scientist/Administrators and the Principal Investigators will meet (perhaps by telephone conference) to select the outside committee members and to elect a Chair. NIH staff may not serve as the committee Chair. The NIGMS Program Director will schedule the first meeting of the Steering Committee. The Chair will be responsible for developing meeting agendas and chairing meetings. A meeting schedule will be prepared at the first meeting. Two meetings will be held each year, usually in Bethesda, MD. Around the time of the meetings, the data liaisons of the Research Groups and a representative of the Database Group will also meet, possibly in Bethesda, MD, or possibly at the Pharmacogenetic Database site. Subcommittees may be established by the Steering Committee as necessary. Additional members may be added by action of the Steering Committee, through discussion with the NIGMS Program Director. The Steering Committee will: o Serve as the main governing board o Discuss progress within the Pharmacogenetic Research Network and Database o Set standards and work to standardize data format and nomenclature o Develop common guidelines and procedures o Consider the representative views of other researchers o Participate in the process of developing a cohesive group o Advise NIH on scientific opportunities, emerging needs, or impediments Administrative Coordination Activities The NIGMS Program Director will assume responsibility for normal stewardship of the awards, and for coordination of the Pharmacogenetic Research Network and Database. Logistical arrangements will be made for the Steering Committee meetings and other administrative duties related to the committee functions, such as conference calls, report mailings, publications tracking, etc. These activities may be accomplished by a variety of arrangements, such as by adding funds to the Research Groups and Database Group to support an administrative contractor. Data and intellectual property will not be handled centrally prior to its public release; the awardees are responsible for providing data tracking. If clinical studies are proposed, NIH may establish a Data Safety and Monitoring Board. Arbitration Process Any disagreements that may arise in scientific or programmatic matters (within the scope of the award) between award recipients and the NIH may be brought to arbitration. An Arbitration Panel composed of three members will be convened. It will be composed of three members: a designee of the Steering Committee chosen without NIH staff voting, one NIH designee, and a third designee with expertise in the relevant area who is chosen by the other two; in the case of an individual disagreement, the first member may be chosen by the individual awardee. This special arbitration procedure in no way affects the awardee's right to appeal an adverse action that is otherwise appealable in accordance with PHS regulations 42 CFR Part 50, Subpart D and HHS regulation at 45 CFR Part 16. Milestones and Evaluations Applicants should define yearly milestones in their applications, and the selected awardees will have the opportunity to modify these milestones at the time of their awards. The awardees' milestones will be provided to the Steering Committee. It is expected that the milestones should be adjusted annually at the award anniversary dates, both to incorporate a group's scientific accomplishments and progress in the field in general, as well as to reflect the recommendations of the Steering Committee. In accordance with the procedure described above, the NIH Scientist/Administrators may recommend augmenting any project, as discussed through the Steering Committee, or reducing or withholding funds for any project that substantially fails to meet its milestones or to remain state-of-the-art. The Director, NIGMS, retains the right to call a meeting of advisors, most likely members of the National Advisory General Medical Sciences Council or their designee(s), at any time to provide advice on the scientific progress of the Pharmacogenetic Research Network and Database. It is anticipated that such a group of advisors may want to attend a meeting of the Steering Committee as part of its fact-finding mission. Any information or reports will be shared with the other Institutes/Centers of the NIH participating in this initiative and the Director, NIH. ISSUES IN RESEARCH INVOLVING HUMAN SUBJECTS The nature of the research proposed in response to this initiative will likely include applications to conduct studies on the genetic basis of variation in drug responses among different racial, ethnic, and sociocultural populations, or in individuals and families affected by particular diseases. Sensitivity to issues involving the protection of human subjects will be required in approaching this research. Every effort should be made to consider the potential impact of the proposed research on the particular group proposed for study. Careful consideration should be given to the potential risks of stigmatization and discrimination as well as the benefits of the knowledge to be gained. Thorough, current, and clear informed consent of the appropriate scope must be obtained from all participants. Subjects must be informed about the potential for information generated from their samples being deposited into the Pharmacogenetic Database. The value of the information gained through studies of human genetics will be diminished if that information is misinterpreted or misused to stigmatize or discriminate against defined populations. Thought must be given to these issues in human subjects research prior to responding to this RFA with a proposal. Clear plans for recruitment, informed consent, and the protection of privacy and confidentiality of human subjects should be addressed in the application and will be considered during the review process. Potential applicants are referred to the NIH Office of Protection from Research Risks (http://www.nih.gov/grants/oprr/oprr.htm) for discussion of the NIH application requirements, and also to the OPRR Institutional Review Board Guidebook Chapter 5 - Human Genetics Research (http://www.hhs.gov/ohrp/irb/irb_chapter5.htm) and other applicable sections, as well as to the Ethical, Legal, and Social Issues Program (ELSI) of NHGRI (http://www.nhgri.nih.gov/ELSI/) for discussion of human subjects protections related to human genetic research. NIH Program Staff (listed below) may also be contacted and can provide guidance on current NIH policies and practices in this area. INCLUSION OF WOMEN AND MINORITIES IN RESEARCH INVOLVING HUMAN SUBJECTS It is the policy of NIH that women and members of minority groups and their subpopulations must be included in all NIH supported biomedical and behavioral research projects involving human subjects, unless a clear and compelling rationale and justification is provided that inclusion is inappropriate with respect to the health of the subjects or the purpose of the research. This policy results from the NIH Revitalization Act of 1993 (Section 492B of Public Law 103-43. All investigators proposing research involving human subjects should read the "NIH Guidelines for Inclusion of Women and Minorities as Subjects in Clinical Research," which was published in the Federal Register of March 28, 1994 (FR 59 14508-14513) and in the NIH Guide for Grants and Contracts, Vol. 23, No. 11, March 18, 1994, and is available at: http://www.nih.gov/grants/guide/1994/94.03.18/notice-nih-guideline008.html. INCLUSION OF CHILDREN AS PARTICIPANTS IN RESEARCH INVOLVING HUMAN SUBJECTS It is the policy of NIH that children (i.e., individuals under the age of 21) must be included in all human subjects research, conducted or supported by the NIH, unless there are scientific and ethical reasons not to include them. All investigators proposing research involving human subjects should read the "NIH Policy and Guidelines" on the Inclusion of Children as Participants in Research Involving Human Subjects, which was published in the NIH Guide for Grants and Contracts, March 6, 1998, and is available at: http://www.nih.gov/grants/guide/notice-files/not98-024.html. PUBLIC BRIEFING Prospective applicants are invited to attend a public briefing on the Pharmacogenetic Research Network and Database on March 19, 1999 in Bethesda, MD. NIH staff will explain the purpose of this RFA, provide instructions regarding the application process, and answer questions. Potential applicant institutions are urged to send a representative to this briefing, both to gather information and to exchange ideas with other potential applicants. Anyone who cannot attend the pre-application meeting will be provided with any distributed materials and a summary of the discussion. For further information about this meeting, contact the NIGMS Program Staff listed under INQUIRIES. LETTER OF INTENT Prospective applicants are asked to submit a letter of intent that includes a descriptive title of the proposed research, the name, address, and telephone and facsimile numbers of the Principal Investigator, the identities of other key personnel and participating institutions, and the number and title of this RFA. The letter should specify whether plans are to submit a Research Group proposal or a Database Group proposal, or both. Although a letter of intent is not required and is not binding, it is highly encouraged. The information it contains will allows NIH staff to estimate the workload and also to avoid potential conflicts of interest in the review. The letter of intent is to be sent by April 30, 1999 to: Rochelle M. Long, Ph.D. Pharmacology, Physiology, and Biological Chemistry Division National Institute of General Medical Sciences 45 Center Drive, Room 2AS.49H, MSC 6200 Bethesda, MD 20892-6200 Telephone: (301) 594-1826 FAX: (301) 480-2802 Email: [email protected] APPLICATION PROCEDURES The research grant application form PHS 398 (rev. 4/98) is to be used in applying for these grants. These forms are available at most institutional offices of sponsored research and from the Division of Extramural Outreach and Information Resources, National Institutes of Health, 6701 Rockledge Drive, MSC 7910, Bethesda, MD 20892-7910, telephone 301/710-0267, E-mail: [email protected], world wide web URL: http://www.nih.gov/grants/forms.htm. The RFA label available in the PHS 398 (rev. 4/98) application form must be affixed to the bottom of the face page of the application. Failure to use this label could result in delayed processing of the application such that it may not reach the review committee in time for review. In addition, the RFA title and number must be typed on line 2 of the face page of the application form and the YES box must be marked. Applicant institutions proposing both a Research Group and a Database Group must develop the components as separate applications. Submit a signed, typewritten original of the application, including the checklist, and five signed photocopies, in one package to: CENTER FOR SCIENTIFIC REVIEW NATIONAL INSTITUTES OF HEALTH 6701 ROCKLEDGE DRIVE, SUITE 6095, MSC 7710 BETHESDA, MD 20892-7710 BETHESDA, MD 20817 (for express/courier service) Applications must be received by the application receipt date listed in the heading of this RFA. If an application is received after that date, it will be returned to the applicant without review. The Center for Scientific Review (CSR) will not accept any application in response to this RFA that is essentially the same as one currently pending initial review, unless the applicant withdraws the pending application. CSR will not accept any application that is essentially the same as one already reviewed. This does not preclude the submission of substantial revisions of applications already reviewed, but such applications must include an introduction addressing the previous critique(s). Special application requirements: An integrated application should be prepared for either a Research Group or a Database Group. The aim is to present a comprehensive and cross-disciplinary team approach to the problem being studied. The entire application should have a face page, abstract, consolidated budget, key personnel listing, biographical sketches, other support, existing resources and facilities, letters of collaboration, etc. The page limit for the research plan (including specific aims, background and significance, preliminary studies, and research design and methods) is increased to 60 pages total. For a Research Group, an overview section should be prepared that includes an overall description which defines the scope and objectives, and provides the rationale for selection of the area of scientific concentration. Usually, for a Research Group, this would be the choice of proteins or genes, or perhaps a disease/model of interest, where genetic variation contributes to differences in drug responses. The proposal may have sections that are highly integrated, in order to provide a multidisciplinary approach to studying the proteins or genes of interest. Some components may exist as cores or resources that are integral to the entire group. All parts of the application must be described in sufficient detail to be completely understood, with the appropriate goals and timetable. For a Database Group, an overview section should be prepared that includes an overall description which defines the scope and objectives, and provides a strategy for creating a common, public database. For a Database group, the overview section might describe the approaches taken to build a Pharmacogenetic Database. For example, the application may describe how the Pharmacogenetic Database will be developed in stages or built around significant component parts. All parts of the application must be described in sufficient detail to be completely understood, with the appropriate goals and timetable. Additionally, the following areas should be addressed, where appropriate, in the respective applications: For a Research Group, describe the timing for release of data into the Pharmacogenetic Database (this may be modified by recommendation of the Steering Committee), or other databases For a Research Group, describe plans for handling intellectual property resulting from the studies, or for commercialization of any discoveries (and implications for participating subjects) For a Research Group, describe plans for human subjects, including definition(s) of the population(s), plans for recruitment, informed consent forms (describing anticipated risks and benefits, plans for subject confidentiality, deposition of information into a database, follow-up with participants), plans for stored or shared samples (and their prior informed consents), or use of any established sample sets For a Research Group, describe the phenotyping criteria (use NIH standards where standardized criteria exist, e.g., information on clinical diagnostic tests used for studies of the genetics of brain disorders such as schizophrenia, bipolar disorder, and late-onset Alzheimer's disease can be found at http://zork.wustl.edu/nimh/NIMH_initiative/NIMH_initiative_link.html For a Research Group, a data liaison person with the appropriate experience should be identified, who will interact with the Database Group and the Pharmacogenetic Database For a Database Group, describe the timing and method desired for receipt of information into the Pharmacogenetic Database (this may be modified by recommendation of the Steering Committee) For a Database Group, provide evidence of communication or links with a proposed Research Group or similar site, assuring that the appropriate expertise is available for interactions For a Research Group or Database Group, identify any unique resources, services, or facilities at the institution (even if support is not sought here, e.g., a General Clinical Research Center, GCRC) For a Research Group or Database Group, describe in detail any other support that significantly impacts this application (even if funding is not sought here, e.g., where knowledge of ongoing research projects is essential to the evaluation of this proposal) For a Research Group or Database Group, describe plans for sharing any materials with other researchers (e.g., samples, reagents, software) For a Research Group or Database Group, specify the yearly milestones (these will be provided to the Steering Committee, if the application is awarded) For a Research Group or Database Group, describe the mechanism for administration of the research activities within the Group (e.g. regular meetings, staffing, data exchange, external evaluations, etc.) For a Research Group or Database Group, state the mechanism for collecting other researchers' views For a Research Group or Database Group, funds should be requested for the Principal Investigator or his/her designate to attend two Steering Committee meetings annually in Bethesda, MD For a Research Group or Database Group, funds should be requested for the data liaison person to meet with a representative of the Database Group two times annually in Bethesda, MD (these meetings may be moved to the Database Group site, if practical) For a Research Group or Database Group, funds should be requested to cover any data tracking and monitoring procedures, or data transfer activities associated with coordination of the Pharmacogenetic Research Network and Database (e.g., reporting to a Data Safety and Monitoring Board for clinical studies, costs of depositing data into the Pharmacogenetic Database, etc.) For a Research Group or Database Group, applicant institutions should present their intellectual property policies and practices REVIEW CONSIDERATIONS Upon receipt, applications will be reviewed for completeness by the Center for Scientific Review (CSR) and for responsiveness by NIGMS. Incomplete and/or non- responsive applications will be returned to the applicant without further consideration. Applications that are complete and responsive to the RFA will be evaluated for scientific and technical merit by an appropriate peer review group convened by CSR in accordance with the review criteria stated below. As part of the initial review process a process may be used in which only those applications deemed to have the highest scientific merit (generally the top half of the applications under review) will be discussed, assigned a priority score, and receive a second level review by the appropriate national advisory council or board. Review Criteria The goals of NIH-supported research are to advance our understanding of biological systems, improve the control of disease, and enhance health. In the written comments reviewers will be asked to discuss the following aspects of the application in order to judge the likelihood that the proposed research will have a substantial impact on the pursuit of these goals. Each of these criteria will be addressed and considered in assigning the overall score, weighting them as appropriate for each application. Note that the application does not need to be strong in all categories to be judged likely to have major scientific impact and thus deserve a high priority score. For example, an investigator may propose to carry out important work that by its nature is not innovative but is essential to move a field forward. Significance: Does this study address an important problem? If the aims of the application are achieved, how will scientific knowledge be advanced? What will be the effect of these studies on the concepts or methods that drive this field? Approach: Are the conceptual framework, design, methods, and analyses adequately developed, well-integrated, and appropriate to the aims of the project? Does the applicant acknowledge potential problem areas and consider alternative tactics? Innovation: Does the project employ novel concepts, approaches or method? Are the aims original and innovative? Does the project challenge existing paradigms or develop new methodologies or technologies? Investigator: Are the investigators appropriately trained and well suited to carry out this work? Is the work proposed appropriate to the experience level of the principal investigator and other researchers (if any)? Environment: Does the scientific environment in which the work will be done contribute to the probability of success? Do the proposed experiments take advantage of unique features of the scientific environment or employ useful collaborative arrangements? Is there evidence of institutional support? Applicants will be evaluated in the review process for their response to the Research Objectives, described above, and for their ability to create an infrastructure through complementary, synergistic connections. In addition, the scientific and technical criteria listed in the special application requirements above will be considered and judged for appropriateness. The initial review group will also examine any special needs for the protection of human subjects and the safety of the research environment. In accordance with NIH policy, all applications will be reviewed with respect to the following: o The adequacy of plans to include both genders, minorities and their subgroups, and children as appropriate for the scientific goals of the research. Plans for the recruitment and retention of subjects will also be evaluated. o The reasonableness of the proposed budget and duration in relation to the proposed research. o The adequacy of the proposed protection for humans, animals or the environment, to the extent they may be adversely affected by the project proposed in the application. Schedule: Public Information Session at NIH: March 19, 1999 Letter of Intent Receipt Date: April 30, 1999 Application Receipt Date: July 27, 1999 Peer Review Date: November 1999 Advisory Council Date: January 2000 Earliest Anticipated Award Date: April 1, 2000 AWARD CRITERIA Award criteria that will be used to make funding decisions include: o scientific merit (as determined by peer review) o availability of funds o program priorities o program balance The NIH retains the flexibility to select and assemble components of the Pharmacogenetic Research Network and Database that optimally blend the research areas, experience, creativity, and the applicants' collective knowledge and combined expertises in the background sciences. INQUIRIES Inquiries concerning this RFA are encouraged. NIH staff welcome the opportunity to clarify any issues or questions from potential applicants. Direct inquiries regarding programmatic issues to: Rochelle M. Long, Ph.D. Pharmacology, Physiology, and Biological Chemistry Division National Institute of General Medical Sciences 45 Center Drive, Room 2AS.49H, MSC 6200 Bethesda, MD 20892-6200 Telephone: (301) 594-1826 FAX: (301) 480-2802 Email: [email protected] Susan E. Old, Ph.D. Division of Heart and Vascular Diseases National Heart, Lung, and Blood Institute 6701 Rockledge Drive, MSC 7940 Bethesda, MD 20892-7940 Telephone: (301) 435-1802 FAX: (301) 480-1336 Email: [email protected] Lisa D. Brooks, Ph.D. Division of Extramural Research National Human Genome Research Institute Building 38A, Room 614 Bethesda, MD 20892-6050 Telephone: (301) 496-7531 FAX: (301) 480-2770 Email: [email protected] Jose Velazquez, Ph.D. Division of Extramural Research and Training National Institute of Environmental Health Sciences P.O. Box 12233 Research Triangle Park, NC 27709 Telephone: (919) 542-4998 FAX: (919) 541-4937 Email: [email protected] Hemin Chin, Ph.D. Division of Basic and Clinical Neuroscience Research National Institute of Mental Health Parklawn Building, Room 10C-26 Rockville, MD 20857 Telephone: (301) 443-1706 FAX: (301) 443-9890 Email: [email protected] Samir Zakhari, Ph.D. Division of Basic Research National Institute n Alcohol Abuse and Alcoholism Willco Building, Suite 402 Bethesda, MD 20892-7003 Telephone: (301) 443-0799 FAX: (301) 594-0673 Email: [email protected] Direct inquiries regarding fiscal matters to: Antoinette Holland Grants Administration Branch National Institute of General Medical Sciences 45 Center Drive, Room 2AN.50B, MSC 6200 Bethesda, MD 20892-6200 Telephone: (301) 594-5132 FAX: (301) 480-3423 Email: [email protected] Jane R. Davis Grants Operations Branch National Heart, Lung, and Blood Institute Two Rockledge Center, Room 7174 Bethesda, MD 20892-7926 Telephone: (301) 435-0166 FAX: (301) 480-3310 Email: davisj@gwgate Diana S. Trunnell Grants Management Branch National Institute of Mental Health 5600 Fishers Lane, Room 7C-08 Rockville, MD 20857 Telephone: (301) 443-2805 FAX: (301) 443-6885 Email: [email protected] Linda Hilley Grants Management Branch National Institute on Alcohol Abuse and Alcoholism Willco Building, Suite 504 Bethesda, MD 20892-7003 Telephone: (301) 443-4704 FAX: (301) 443-3891 Email: [email protected] Although the National Cancer Institute (NCI) is not a formal participant in this RFA, NCI maintains an interest in genes and proteins involved in the activity or metabolism of agents used in the prevention and treatment of cancer, or in the cause and progression of cancer. For more information at NCI contact: Mary K. Wolpert, Ph.D. Division of Cancer Treatment and Diagnosis National Cancer Institute 6130 Executive Boulevard, Room 841 Bethesda, MD 20892-7456 Rockville, MD 20852 (for express/courier service) Telephone: (301) 496-8783 FAX: (301) 402-5200 Email: [email protected] AUTHORITY AND REGULATIONS This program is described in the Catalog of Federal Domestic Assistance Nos. 93.113, 93.172, 93.242, 93.273, 93.837, 93.859, 93.862. Awards are made under authorization of the Public Health Service Act, Title IV, Part A (Public Law 78-410, as amended by Public Law 99-158, 42 USC 241 and 285) and administered under NIH Grants Policy Statement (10/1/98) and Federal Regulations 42 CFR 52 and 45 CFR Part 74. This program is not subject to the intergovernmental review requirements of Executive Order 12372 or Health Systems Agency review. The PHS strongly encourages all grant recipients to provide a smoke-free workplace and promote the non-use of all tobacco products. In addition, Public Law 103-227, the Pro-Children Act of 1994, prohibits smoking in certain facilities (or in some cases, any portion of a facility) in which regular or routine education, library, day care, health care, or early childhood development services are provided to children. This is consistent with the PHS mission to protect and advance the physical and mental health of the American people.
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