EXPIRED
CORRELATIVE STUDIES USING SPECIMENS FROM MULTI-INSTITUTIONAL PREVENTION AND TREATMENT TRIALS RELEASE DATE: January 30, 2003 PA NUMBER: PA-03-064 (This PA has been replaced by, PA-05-062) EXPIRATION DATE: March 1, 2005 National Cancer Institute (NCI) (http://www.nci.nih.gov/) APPLICATION RECEIPT DATE: Standard receipt dates. (http://grants.nih.gov/grants/dates.htm) This Program Announcement (PA) replaces PA-01-015, which was published in the NIH Guide on November 13, 2000. THIS PA CONTAINS THE FOLLOWING INFORMATION o Purpose of the PA o Research Objectives o Mechanism(s) of Support o Eligible Institutions o Individuals Eligible to Become Principal Investigators o Where to Send Inquiries o Submitting an Application o Peer Review Process o Review Criteria o Award Criteria o Required Federal Citations PURPOSE This Program Announcement (PA) is intended to support correlative studies by using tumor specimens collected during multi-institutional trials funded by the National Cancer Institute (NCI). The Cancer Therapy Evaluation Program (CTEP), the Cancer Diagnosis Program (CDP) and the Cancer Biomarkers Research Group (CBRG) from the NCI will cooperatively sponsor this PA with the following objectives: 1. To provide investigators with support for correlative studies using trial related tumor specimens to compare genetic variations and molecular changes from cell nucleus, cytosol, cell surface and extracellular matrix to tumorigenesis and progression, drug resistance, therapeutic effectiveness of interventions, and various patients' clinical outcomes. 2. To decipher valuable information from these tumor specimens and to discover new cancer interventions by utilizing these tumor tissue resources and accumulated clinical trial results/outcomes for better cancer risk assessment, early detection and prediction for response to various cancer therapies and prevention. 3. To promote translational research and foster collaborations and interactions between basic researchers and clinical investigators from academia, private industry and non-profit organizations to perform correlative studies to ensure that new findings will be rapidly translated into clinical practice. RESEARCH OBJECTIVES Background The Cancer Therapy Evaluation Program (CTEP) and the Cancer Diagnosis Program (CDP), Division of Cancer Treatment and Diagnosis (DCTD) support a program of integrated national networks of clinical investigators and institutions (NCI Clinical Trials Cooperative Groups) for the conduct of large scale, multi-institutional clinical trials. The Community Oncology and Prevention Trials Research Group, Division of Cancer Prevention (DCP), supports programs to improve clinical oncology in community settings and conducts prevention and control trials. The Early Detection Research Network (EDRN) of the Division of Cancer Prevention has created a research platform for collaborating with the clinical trials community and appointed liaisons for the various NCI Cooperative Groups. The EDRN is available for assistance in validation studies and researchers may form collaborations through its Associate Member Program (http://edrn.nci.nih.gov). For the past five years, there have been more than 1409 NCI sponsored clinical trials including cancer treatment and prevention trials. More than 200,000 cancer patients have participated in these trials. Among these trials, there have been 660 clinical trials conducted by Cooperative Groups and 410 trials that were conducted in cancer/clinical centers. Many of these trials have accumulated a large number of tumor specimens enriched with well- annotated information about patients' demographics, pretrial/baseline history, diagnoses, treatment, follow-up data from cancer interventions and prognoses. These tumor specimens contain many valuable diagnostic and prognostic biomarkers, molecules and proteins relating to cell cycle or intracellular signal transduction pathways, and informative molecular profiles relevant to specific cancer intervention and cancer progression. Thus, utilizing these extremely valuable resources is a tremendous opportunity to identify new mechanisms and develop more effective cancer interventions at a molecular level. Furthermore, using these specimens linked to annotated clinical data in correlative studies will extend NCI's previous scientific efforts and also complement NCI's current and future endeavors in identifying new targets for cancer intervention in a cost-effective manner. With advances in the understanding of molecular cancer genetics and basic cancer biology as well as the development of powerful new technologies including microarrays, proteomics and bioinformatics, both basic and clinical investigators are now in a better position to conduct correlative studies with the well-annotated tumor specimens. This PA further encourages researchers to take advantage of newly developed technologies and existing tumor specimens, and promotes collaborations and interactions between basic researchers and clinical investigators. Now, it is feasible to compare a spectrum of molecular and genetic changes from cell nucleus, cytosol, cell surface, and extracellular matrix to tumorigenesis, tumor progression, drug resistance, and therapeutic effectiveness of various cancer interventions. In addition, investigators can link 1) newly identified biomarkers to specific cancers for early detection and diagnosis; 2) activation/deactivation of signal transduction pathways to specific cancer prevention, treatment, drug resistance and clinical outcome; 3) tumor cellular and molecular changes to various clinical trials= success and failure. Furthermore, the tumor specimens will enable researchers to conduct correlative studies not only vertically within an individual trial but also horizontally among multiple trials. All of these advances will help investigators to improve future clinical trials and to develop better cancer interventions. NCI encourages correlative laboratory studies linked to large scale multi-institutional clinical trials to improve therapeutic and preventive approaches. Currently, many laboratory investigators may not have access to patient specimens or outcome data for large scale analysis. The Clinical Trials Cooperative Groups have established tumor and specimen banks for specific diseases, and reference laboratories necessary for the diagnosis and monitoring of patients. These clinical trials organizations maintain statistical databases and are capable of comparing and correlating laboratory data to clinical outcome. This initiative proposes to create new collaborations and provides a funding mechanism. For an only relatively small additional investment, researchers will be able to obtain definitive data on the relationship of molecular biological features and the clinical behavior of the human tumors. Objectives and approaches will be investigator-initiated with NCI assisting investigators with accessing specimens to ensure that promising new approaches will be moved rapidly into clinical practice. Research Goals and Scope The objectives of this PA are to foster collaborations and interactions between basic researchers, private industry, and clinical investigators to perform clinical translational research on promising predictive and prognostic markers. These studies should focus on clinical correlative or mechanistic studies that will be useful for cancer risk assessment, early detection, prognosis, and predicting response to therapy and to prevention interventions. These studies should focus on correlations between biologic features of tissue specimens collected from the NCI Cooperative Groups or other large multi-institutional clinical trials and patient outcomes. This PA will utilize the R01 investigator initiated research grant mechanism to support clinical correlative studies on large multi-institutional clinical trials for validation of promising predictive or prognostic markers, and the exploratory/pilot grant mechanisms (R21) to support pilot exploratory studies. For the R01 grant submissions, preliminary data, including relevant animal models or analysis of patient specimens, that supports the hypotheses must be provided. Because the R21 grant mechanism is designed to support pilot or feasibility studies, preliminary data as evidence of feasibility are not required. The correlative studies should be based on strong and testable hypotheses. A clear rationale should be given for the experimental design and technical methodologies selected. The hypotheses tested must relate to potential clinical applications such as patient monitoring for preventive or therapeutic interventions, development of new therapeutic strategies or testing new biomarkers for the identification of patient subsets for specific prevention or treatment approaches. The laboratory assays must use specimens from patients receiving defined treatments in large clinical trials such as phase III clinical trials. Applications must include a statistical section describing the study design and plans for analysis of data designed to test the hypotheses. All investigators are encouraged to work with multi- institutional organizations or form a consortium in order to access sufficient numbers of patient specimens and clinical information to test the proposed hypotheses. Some examples of therapeutic laboratory correlates may include but are not limited to: (1) phenotypic or genotypic alterations which appear to correlate with the development of therapy resistance; (2) loss or inactivation of tumor suppressor genes related to prognosis; (3) analysis of basal membrane factors or genes related to tumor invasion and metastases; (4) studies of chromosomal rearrangements or deletions that may be used for risk assessment, early detection, or prognosis; (5) correlation of tumor growth factors or oncogenes with response to therapies during cancer progression; (6) alterations in cell cycle control; (6) characterization of immune response with association to new immunotherapies for prevention or treatment; (7) evaluation of serum or tumor biomarkers for risk assessment, early detection, or prognosis; (8) analyses of expression of cellular receptors for growth factors or differentiating agents; (9) defining and targeting specific signal transduction pathways and populations of cells for therapy; (10) analysis of in vitro response of tumor cells to growth factors/differentiating agents; and (11) evaluating accessible sites for precancerous changes occurring in less accessible sites, for instance the oral cavity as a surrogate site for the lung in smokers. Surrogate sites may be anatomically-associated, such as oral cavity to lung cancer, or may be functionally related, such as scalp hair follicles to prostate cancer, both of which have androgen receptors. Researchers who have previously not collaborated with the NCI Cooperative Groups or Division of Cancer Prevention Programs are encouraged to contact them and discuss potential collaborations to obtain access to NCI-supported specimen banks and outcome data for laboratory analysis under this PA. NCI staff (please see WHERE TO SEND INQUIRES) will be able to provide assistance in identifying NCI Cooperative Groups that would be interested in collaborating with basic science investigators on laboratory and clinical studies of new markers. The NCI Tissue Expediter is available to assist investigators in determining the appropriate tissue resource for their research project (http://www.cancerdiagnosis.nci.nih.gov/specimens/finding.html#expediter). Information on how to access NCI-supported specimen banks including contacts for the NCI Cooperative Group banks is available at the following web address: http://www.specimens.ims.nci.nih.gov. The NCI Cooperative Groups have mechanisms in place to review proposals for access to NCI Cooperative Group tissue banks from prevention and treatment trials. A letter from the appropriate NCI Group Chair confirming approval to provide specimens in the event of NCI funding of the PA grant application should be included in the grant application. For Intergroup tissue banks, a letter from the Intergroup tissue bank chair should also be included. MECHANISM OF SUPPORT Support of this program will be through the National Institutes of Health (NIH) research project grant (R01) mechanism and the exploratory/developmental grant (R21) mechanism. Applicants will be responsible for the planning, direction, and execution of the proposed project. All PHS and NIH grants policies will apply to applications received and awards made in response to this PA. Applicants for the R21 grant mechanism may request up to $100,000 direct costs (four budget modules) per year unless the application includes consortium costs, in which case the limit is $125,000 direct costs (five budget modules) per year and support may not exceed two years. The R21 grants are non-renewable and competitive continuation of projects developed under this program will be through the R01 research grant mechanism. Applications for the R01 grant mechanism may not exceed five years. NIH grants policies apply to these awards. This PA uses just-in-time concepts. It also uses the modular as well as the non-modular budgeting formats (see http://grants.nih.gov/grants/funding/modular/modular.htm). Specifically, if you are submitting an application with direct costs in each year of $250,000 or less, use the modular format. Otherwise follow the instructions for non- modular research grant applications. ELIGIBLE INSTITUTIONS You may submit (an) application(s) if your institution has any of the following characteristics: o For-profit or non-profit organizations o Public or private institutions, such as universities, colleges, hospitals, and laboratories o Units of State and local governments o Eligible agencies of the Federal government o Domestic or foreign o Faith-based or community-based organizations INDIVIDUALS ELIGIBLE TO BECOME PRINCIPAL INVESTIGATORS Any individual with the skills, knowledge, and resources necessary to carry out the proposed research is invited to work with their institution to develop an application for support. Individuals from underrepresented racial and ethnic groups as well as individuals with disabilities are always encouraged to apply for NIH programs. WHERE TO SEND INQUIRIES We encourage your inquiries concerning this PA and welcome the opportunity of answering questions from potential applicants. Inquiries may fall into two areas: scientific/research and financial or grants management issues: Direct your questions about scientific/research issues to: Drs. Roy Wu, Heng Xie, Steven Krosnick Clinical Grants & Contracts Branch Cancer Therapy Evaluation Program Division of Cancer Treatment and Diagnosis National Cancer Institute Executive Plaza North, Rm. 7009 6130 Executive Boulevard Bethesda, MD 20892-7432 Rockville, MD 20852 (express mail) Phone: 301-496-8866 Fax: 301-480-4663 E-mails: [email protected] [email protected] [email protected] Magdalena Thurin, Program Director Cancer Diagnosis Program Division of Cancer Treatment and Diagnosis National Cancer Institute/NIH Executive Plaza North, Rm. 6130/6034 6130 Executive Boulevard Bethesda, MD 20892 Rockville, MD 20852 (express mail) Phone: 301-496-8639 Fax: 301-402-7819 E-mail: [email protected] Sudhir Srivastava, Program Director Cancer Biomarkers Research Group Division of Cancer Prevention National Cancer Institute/NIH 6130 Executive Plaza North, Suite 3142 Bethesda, MD 20892 Rockville, MD 20852 (express mail) Phone: 301-435-1594 Fax: 301-402-8990 E-mail: [email protected] Direct your questions about financial or grants management matters to: Jill Rogers Grants Management Branch National Cancer Institute Executive Plaza South, Room 243 Bethesda, MD 20892 Rockville, MD 20852 (express mail) Phone: (301) 496-8699 or (301) 496-7800 FAX: (301) 496-8601 Email: [email protected] Crystal Wolfrey Grants Management Branch National Cancer Institute Executive Plaza South, Room 243 Bethesda, MD 20892 Rockville, MD 20852 (express mail) Phone: (301) 496-8634 FAX: (301) 496-4801 Email: [email protected] SUBMITTING AN APPLICATION Applications must be prepared using the PHS 398 research grant application instructions and forms (rev. 5/2001, Updated: 6/28/2002). The PHS 398 is available at http://grants.nih.gov/grants/funding/phs398/phs398.html in an interactive format. For further assistance contact GrantsInfo, telephone (301) 710-0267, email: [email protected]. APPLICATION RECEIPT DATES: Applications submitted in response to this program announcement will be accepted at the standard application deadlines, which are available at http://grants.nih.gov/grants/dates.htm. Application deadlines are also indicated in the PHS 398 application kit. SPECIFIC INSTRUCTIONS FOR MODULAR GRANT APPLICATIONS: Applications requesting up to $250,000 per year in direct costs must be submitted in a modular grant format. The modular grant format simplifies the preparation of the budget in these applications by limiting the level of budgetary detail. Applicants request direct costs in $25,000 modules. Section C of the research grant application instructions for the PHS 398 (rev. 5/2001) at http://grants.nih.gov/grants/funding/phs398/phs398.html includes step-by-step guidance for preparing modular grants. Additional information on modular grants is available at http://grants.nih.gov/grants/funding/modular/modular.htm. SPECIFIC INSTRUCTIONS FOR APPLICATIONS REQUESTING $500,000 OR MORE PER YEAR: Applications requesting $500,000 or more in direct costs for any year must include a cover letter identifying the NIH staff member within one of NIH institutes or centers who has agreed to accept assignment of the application. Applicants requesting more than $500,000 must carry out the following steps: 1) Contact the NCI program staff at least 6 weeks before submitting the application, i.e., as you are developing plans for the study; 2) Obtain agreement from the NCI program staff that the institute will accept your application for consideration for award; and, 3) Identify, in a cover letter sent with the application, the NCI program staff who agreed to accept assignment of the application. This policy applies to all investigator-initiated new (type 1), competing continuation (type 2), competing supplement, or any amended or revised version of these grant application types. Additional information on this policy is available in the NIH Guide for Grants and Contracts, October 19, 2001 at http://grants.nih.gov/grants/guide/notice-files/NOT-OD-02-004.html. SENDING AN APPLICATION TO THE NIH: Submit a signed, typewritten original of the application, including the checklist, and five signed photocopies in one package to: Center for Scientific Review National Institutes of Health 6701 Rockledge Drive, Room 1040, MSC 7710 Bethesda, MD 20892-7710 Bethesda, MD 20817 (for express/courier service) APPLICATIONS HAND-DELIVERED BY INDIVIDUALS TO THE NATIONAL CANCER INSTITUTE WILL NO LONGER BE ACCEPTED. This policy does not apply to courier deliveries (i.e. FEDEX, UPS, DHL, etc.) (http://grants.nih.gov/grants/guide/notice-files/NOT-CA-02-002.html) This change in practice is effective immediately. This policy is similar to and consistent with the policy for applications addressed to Centers for Scientific Review as published in the NIH Guide Notice http://grants.nih.gov/grants/guide/notice-files/NOT-OD-02-012.html. APPLICATION PROCESSING: Applications must be received by or mailed on or before the receipt dates described at http://grants.nih.gov/grants/funding/submissionschedule.htm. The CSR will not accept any application in response to this PA that is essentially the same as one currently pending initial review unless the applicant withdraws the pending application. The CSR will not accept any application that is essentially the same as one already reviewed. This does not preclude the submission of a substantial revision of an application already reviewed, but such application must include an Introduction addressing the previous critique. PEER REVIEW PROCESS Applications submitted for this PA will be assigned on the basis of established PHS referral guidelines. An appropriate scientific review group convened in accordance with the standard NIH peer review procedures (http://www.csr.nih.gov/refrev.htm) will evaluate applications for scientific and technical merit. As part of the initial merit review, all applications will: o Receive a written critique o Undergo a process in which only those applications deemed to have the highest scientific merit, generally the top half of the applications under review, will be discussed and assigned a priority score o Those that receive a priority score will undergo a second level review by the National Cancer Advisory Council. REVIEW CRITERIA The goals of NIH-supported research are to advance our understanding of biological systems, improve the control of disease, and enhance health. In the written comments, reviewers will be asked to discuss the following aspects of your application in order to judge the likelihood that the proposed research will have a substantial impact on the pursuit of these goals: o Significance o Approach o Innovation o Investigator o Environment The scientific review group will address and consider each of these criteria in assigning your application's overall score, weighting them as appropriate for each application. Your application does not need to be strong in all categories to be judged likely to have major scientific impact and thus deserve a high priority score. For example, you may propose to carry out important work that by its nature is not innovative but is essential to move a field forward. (1) SIGNIFICANCE: Does your study address an important problem? If the aims of your application are achieved, how do they advance scientific knowledge? What will be the effect of these studies on the concepts or methods that drive this field? (2) APPROACH: Are the conceptual framework, design, methods, and analyses adequately developed, well integrated, and appropriate to the aims of the project? Do you acknowledge potential problem areas and consider alternative tactics? (3) INNOVATION: Does your project employ novel concepts, approaches or methods? Are the aims original and innovative? Does your project challenge existing paradigms or develop new methodologies or technologies? (4) INVESTIGATOR: Are you appropriately trained and well suited to carry out this work? Is the work proposed appropriate to your experience level as the principal investigator and to that of other researchers (if any)? (5) ENVIRONMENT: Does the scientific environment in which your work will be done contribute to the probability of success? Do the proposed experiments take advantage of unique features of the scientific environment or employ useful collaborative arrangements? Is there evidence of institutional support? ADDITIONAL REVIEW CRITERIA: In addition to the above criteria, your application will also be reviewed with respect to the following: PROTECTIONS: The adequacy of the proposed protection for humans, animals, or the environment, to the extent they may be adversely affected by the project proposed in the application. INCLUSION: The adequacy of plans to include subjects from both genders, all racial and ethnic groups (and subgroups), and children as appropriate for the scientific goals of the research. Plans for the recruitment and retention of subjects will also be evaluated. (See Inclusion Criteria included in the section on Federal Citations, below) BUDGET: The reasonableness of the proposed budget and the requested period of support in relation to the proposed research. AWARD CRITERIA Applications submitted in response to a PA will compete for available funds with all other recommended applications. The following will be considered in making funding decisions: o Scientific merit of the proposed project as determined by peer review o Availability of funds o Relevance to program priorities REQUIRED FEDERAL CITATIONS INCLUSION OF WOMEN AND MINORITIES IN CLINICAL RESEARCH: It is the policy of the NIH that women and members of minority groups and their sub-populations must be included in all NIH-supported clinical research projects unless a clear and compelling justification is provided indicating that inclusion is inappropriate with respect to the health of the subjects or the purpose of the research. This policy results from the NIH Revitalization Act of 1993 (Section 492B of Public Law 103-43). All investigators proposing clinical research should read the AMENDMENT "NIH Guidelines for Inclusion of Women and Minorities as Subjects in Clinical Research - Amended, October, 2001," published in the NIH Guide for Grants and Contracts on October 9, 2001 (http://grants.nih.gov/grants/guide/notice-files/NOT-OD-02-001.html); a complete copy of the updated Guidelines are available at http://grants.nih.gov/grants/funding/women_min/guidelines_amended_10 _2001.htm. The amended policy incorporates: the use of an NIH definition of clinical research; updated racial and ethnic categories in compliance with the new OMB standards; clarification of language governing NIH-defined Phase III clinical trials consistent with the new PHS Form 398; and updated roles and responsibilities of NIH staff and the extramural community. The policy continues to require for all NIH-defined Phase III clinical trials that: a) all applications or proposals and/or protocols must provide a description of plans to conduct analyses, as appropriate, to address differences by sex/gender and/or racial/ethnic groups, including subgroups if applicable; and b) investigators must report annual accrual and progress in conducting analyses, as appropriate, by sex/gender and/or racial/ethnic group differences. INCLUSION OF CHILDREN AS PARTICIPANTS IN RESEARCH INVOLVING HUMAN SUBJECTS: The NIH maintains a policy that children (i.e., individuals under the age of 21) must be included in all human subjects research, conducted or supported by the NIH, unless there are scientific and ethical reasons not to include them. This policy applies to all initial (Type 1) applications submitted for receipt dates after October 1, 1998. All investigators proposing research involving human subjects should read the "NIH Policy and Guidelines" on the inclusion of children as participants in research involving human subjects that is available at http://grants.nih.gov/grants/funding/children/children.htm. REQUIRED EDUCATION ON THE PROTECTION OF HUMAN SUBJECT PARTICIPANTS: NIH policy requires education on the protection of human subject participants for all investigators submitting NIH proposals for research involving human subjects. You will find this policy announcement in the NIH Guide for Grants and Contracts Announcement, dated June 5, 2000, at http://grants.nih.gov/grants/guide/notice-files/NOT-OD-00-039.html. A continuing education program in the protection of human participants in research in now available online at: http://cme.nci.nih.gov/. PUBLIC ACCESS TO RESEARCH DATA THROUGH THE FREEDOM OF INFORMATION ACT: The Office of Management and Budget (OMB) Circular A-110 has been revised to provide public access to research data through the Freedom of Information Act (FOIA) under some circumstances. Data that are (1) first produced in a project that is supported in whole or in part with Federal funds and (2) cited publicly and officially by a Federal agency in support of an action that has the force and effect of law (i.e., a regulation) may be accessed through FOIA. It is important for applicants to understand the basic scope of this amendment. NIH has provided guidance at http://grants.nih.gov/grants/policy/a110/a110_guidance_dec1999.htm. Applicants may wish to place data collected under this PA in a public archive, which can provide protections for the data and manage the distribution for an indefinite period of time. If so, the application should include a description of the archiving plan in the study design and include information about this in the budget justification section of the application. In addition, applicants should think about how to structure informed consent statements and other human subjects procedures given the potential for wider use of data collected under this award. URLs IN NIH GRANT APPLICATIONS OR APPENDICES: All applications and proposals for NIH funding must be self-contained within specified page limitations. Unless otherwise specified in an NIH solicitation, Internet addresses (URLs) should not be used to provide information necessary to the review because reviewers are under no obligation to view the Internet sites. Furthermore, we caution reviewers that their anonymity may be compromised when they directly access an Internet site. HEALTHY PEOPLE 2010: The Public Health Service (PHS) is committed to achieving the health promotion and disease prevention objectives of "Healthy People 2010," a PHS-led national activity for setting priority areas. This PA is related to one or more of the priority areas. Potential applicants may obtain a copy of "Healthy People 2010" at http://www.health.gov/healthypeople/. AUTHORITY AND REGULATIONS: This program is described in the Catalog of Federal Domestic Assistance No. 93.393, 93.394, and 93.395, and is not subject to the intergovernmental review requirements of Executive Order 12372 or Health Systems Agency review. Awards are made under authorization of Sections 301 and 405 of the Public Health Service Act as amended (42 USC 241 and 284) and administered under NIH grants policies described at http://grants.nih.gov/grants/policy/policy.htm and under Federal Regulations 42 CFR 52 and 45 CFR Parts 74 and 92. The PHS strongly encourages all grant recipients to provide a smoke-free workplace and discourage the use of all tobacco products. In addition, Public Law 103-227, the Pro-Children Act of 1994, prohibits smoking in certain facilities (or in some cases, any portion of a facility) in which regular or routine education, library, day care, health care, or early childhood development services are provided to children. This is consistent with the PHS mission to protect and advance the physical and mental health of the American people.
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